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Data Structures
struct	bm::tmatrix< T, ROWS, COLS >
	Mini-matrix for bit transposition purposes. More...
struct	bm::tmatrix< T, ROWS, COLS >::rstat
	Row characteristics for transposed matrix. More...
struct	bm::bit_grabber< T, BPC >
struct	bm::bit_grabber< unsigned, 32 >
struct	bm::bit_grabber< unsigned short, 16 >
struct	bm::bit_grabber< unsigned char, 8 >
struct	bm::bit_trans_grabber< T, BPC, BPS >
class	bm::gap_transpose_engine< GT, BT, BLOCK_SIZE >
	Bit-plain splicing of a GAP block. More...
Namespaces
namespace	bm
Functions
template<typename T , unsigned BPC, unsigned BPS>
void	bm::vect_bit_transpose (const T *arr, unsigned arr_size, T tmatrix[BPC][BPS])
	Generic bit-array transposition function T - array type (any int) BPC - bit plain count BPS - bit plain size.
template<typename T , unsigned BPC, unsigned BPS>
void	bm::vect_bit_trestore (const T tmatrix[BPC][BPS], T *arr)
	Restore bit array from the transposition matrix T - array type (any int) BPC - bit plain count BPS - bit plain size.
template<typename T , unsigned BPC, unsigned BPS>
void	bm::tmatrix_distance (const T tmatrix[BPC][BPS], unsigned distance[BPC][BPC])
	Compute pairwise Row x Row Humming distances on plains(rows) of the transposed bit block.
template<typename T , unsigned BPC, unsigned BPS>
void	bm::bit_iblock_make_pcv (const unsigned distance[BPC][BPC], unsigned char *pc_vector)
	!< ibpc limiter
void	bm::bit_iblock_pcv_stat (const unsigned char BMRESTRICT pc_vector, const unsigned char BMRESTRICT pc_vector_end, unsigned *BMRESTRICT pc_vector_stat)
	Compute number of ibpc codes in pc_vector.
void	bm::bit_iblock_reduce (const unsigned tmatrix[bm::set_block_plain_cnt][bm::set_block_plain_size], const unsigned char BMRESTRICT pc_vector, const unsigned char BMRESTRICT pc_vector_end, unsigned tmatrix_out[bm::set_block_plain_cnt][bm::set_block_plain_size])
	Matrix reduction based on transformation pc vector.
template<class TMatrix >
void	bm::tmatrix_reduce (TMatrix &tmatrix, const unsigned char *pc_vector, const unsigned effective_cols)
	Transposed Matrix reduction based on transformation pc vector.
template<class TMatrix >
void	bm::tmatrix_restore (TMatrix &tmatrix, const unsigned char *pc_vector, const unsigned effective_cols)
	Transposed Matrix restore based on transformation pc vector.
template<typename GT >
void	bm::gap_2_bitblock (const GT BMRESTRICT gap_buf, GT BMRESTRICT block, unsigned block_size)
	Copy GAP block body to bit block with DGap transformation.
template<class TMatrix >
void	bm::compute_tmatrix_rstat (const TMatrix &tmatrix, const unsigned char pc_vector, typename TMatrix::rstat rstat, unsigned effective_cols)
	Compute t-matrix rows statistics used for compression.
template<typename TM >
unsigned	bm::find_effective_columns (const TM &tmatrix)
	Compute effective right column border of the t-matrix.
Variables
const unsigned char	bm::ibpc_uncompr = 0
const unsigned char	bm::ibpc_all_zero = 1
	!< plain uncompressed
const unsigned char	bm::ibpc_all_one = 2
	!< plain ALL ZERO
const unsigned char	bm::ibpc_equiv = 3
	!< plain ALL ONE
const unsigned char	bm::ibpc_close = 4
	!< plain is equal to plain M
const unsigned char	bm::ibpc_end = 8
	!< plain is close to plain M

Data Structures

Namespaces

Functions

Variables